Stephen J.D. O'Keefe, MBBS, MD, MSc, MRCS, FRCP

  • Professor Emeritus of Medicine
Academic Interests

Dr. O’Keefe performs translational research into the physiological and pathophysiological responses to feeding and nutritional deprivation. He has received NIH R01 grant support for his studies on the physiological effects of feeding in pancreatic enzyme synthesis in humans with and without disease, the optimal feeding in patients with severe acute pancreatitis, and, most recently, the role of diet, the microbiome, and its metabolites in determining colon cancer risk in extreme-risk Alaska Natives, high-risk African Americans (AA), and minimal risk rural South Africans (NA). His pivotal 2015 study in Nature Communications showed that switching the diets of AA and NA (i.e., Americans were given a traditional African diet high in fiber, low in meat and fat, while Africans were given a westernized diet high in meant and fat and low in fiber) led to profound changes in the colonic microbiome and its metabolome and reciprocal changes in colonic mucosal biomarkers of cancer risk within two weeks. This supports the hypothesis that diet drives colon cancer risk and that it is largely preventable by a high fiber diet. Studies are underway in Alaska to determine whether fiber supplementation will annul the health disparity and extreme rates of colon cancer risk and mortality in Alaska Natives. Finally, Dr. O’Keefe is partnering with the University of Stellenbosch in South Africa to direct the African Microbiome Institute to study the ecology of the microbiome through the Faculties of Medicine, Agrisciences, and Plant Biology, with the overarching aim of improving the health of all Africans.

Dr. O'Keefe's research interests are linked to his clinical interests. He has 40 years experience in nutritional gastroenterology, stimulated by his unique combination of postgraduate degrees in Medicine and Human Nutrition. His theses were based on the application of stable isotope labeling techniques of amino acids to measure in vivo protein metabolic responses in humans to a variety of GI diseases, including surgical trauma, liver failure, acute and chronic pancreatitis, the short bowel syndrome and intestinal transplantation. These measurements were used to determine the acute metabolic effects of these diseases and their associated rates of protein catabolism to design the most effective forms of metabolic support of malnourished hospitalized patients. There application of these techniques led to paradigm changes in the routine enteral and parenteral nutritional support, summarized in his solo authored "The Principles and Practice of Nutritional Support" (Springer Publ 2015). Dr O'Keefe has played a leadership role in the nutritional support of hospitalized patients, patients with intestinal failure dependent on home IV and enteral feeding, and patients following small bowel transplantation at UPMC. His research into the etiology of colon cancer has added the clinical interest of improving peoples' diets to prevent colon cancer, the second leading cause of cancer deaths worldwide.

Dr. O'Keefe's education effort is focused at the advanced postgraduate and specialist levels, with a focus on international efforts and health disparities. First, the training doctorate and postgraduate students, medical students, and GI fellows. Secondly, his services are in high demand nationally and internationally for lecturing specialists in the areas of nutrition, nutrition support, and more recently, diet and GI cancer. He spent 4 years as vice Chair, and then Chair of the American Gastroenterology Association's Nutrition Section, where his responsibilities were to design educational programs for practicing and academic gastroenterologists, and GI trainees. Working in Africa, he founded the first African Society for Clinical Nutrition - the South African Society of Enteral and Parenteral Nutrition and served subsequently as its President. He has served on educational and symposium organization committees for the equivalent American and European Societies, as well as for Experimental Biology (ASN, ASBMB) and the American Association for Cancer Research. As mentioned above, the publication of his textbook on The Principles and Practice of Nutritional Suooprt was aimed at educating undergraduates, postgraduates, medical students, doctors, and hospital specialists on appropriate artificial feeding of sick patients.

    Education & Training

  • MBBS, Guy's Hospital Medical School, London, England, 1972
  • MRCS and LRCP, Royal College of Physicians, London, England, 1972
  • MSc, London University, 1974
  • MD (by thesis, equivalent to PhD), London University, 1981
  • Fellowship, Intern, Med. & Nutrition, Harvard Medical School, 1978
  • Gastroenterology and Hepatology, King's College, London University, 1980
Recent Publications

Ramaboli MC, Ocvirk S, Khan Mirzaei M, Eberhart BL, Valdivia-Garcia M, Metwaly A, Neuhaus K, Barker G, Ru J, Nesengani LT, Mahdi-Joest D, Wilson AS, Joni SK, Layman DC, Zheng J, Mandal R, Chen Q, Perez MR, Fortuin S, Gaunt B, Wishart D, Methé B, Haller D, Li JV, Deng L, Swart R, O'Keefe SJD. Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer. Nat Commun. 2024 Apr 20;15(1):3379. PMID: 38643180.

Hartman TJ, Christie J, Wilson A, Ziegler TR, Methe B, Flanders WD, Rolls BJ, Loye Eberhart B, Li JV, Huneault H, Cousineau B, Perez MR, O'Keefe SJD. Fibre-rich Foods to Treat Obesity and Prevent Colon Cancer trial study protocol: a randomised clinical trial of fibre-rich legumes targeting the gut microbiome, metabolome and gut transit time of overweight and obese patients with a history of noncancerous adenomatous polyps. BMJ Open. 2024 Feb 5;14(2):e081379. PMID: 38316601.

Ocvirk S, Wilson AS, Posma JM, Li JV, Koller KR, Day GM, Flanagan CA, Otto JE, Sacco PE, Sacco FD, Sapp FR, Wilson AS, Newton K, Brouard F, DeLany JP, Behnning M, Appolonia CN, Soni D, Bhatti F, Methé B, Fitch A, Morris A, Gaskins HR, Kinross J, Nicholson JK, Thomas TK, O'Keefe SJD. A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer. Am J Clin Nutr. 2020 Feb 1;111(2):406-419. PMID: 31851298.

O'Keefe SJ. Diet, microorganisms and their metabolites, and colon cancer. Nat Rev Gastroenterol Hepatol. 2016 Dec;13(12):691-706. PMID: 27848961.

O'Keefe SJ, Li JV, Lahti L, Ou J, Carbonero F, Mohammed K, Posma JM, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert PG, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, Nicholson JK, de Vos WM, Gaskins HR, Zoetendal EG. Fat, fibre and cancer risk in African Americans and rural Africans. Nat Commun. 2015 Apr 28;6:6342. PMID: 25919227.

Ou J, Carbonero F, Zoetendal EG, DeLany JP, Wang M, Newton K, Gaskins HR, O'Keefe SJ. Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans. Am J Clin Nutr. 2013 Jul;98(1):111-20. PMID: 23719549; PMCID: PMC3683814.

Jeppesen PB, Pertkiewicz M, Messing B, Iyer K, Seidner DL, O'Keefe SJ, Forbes A, Heinze H, Joelsson B. Teduglutide reduces need for parenteral support among patients with short bowel syndrome with intestinal failure. Gastroenterology. 2012 Dec;143(6):1473-1481.e3. PMID: 22982184..

O'Keefe SJ, Lee RB, Anderson FP, Gennings C, Abou-Assi S, Clore J, Heuman D, Chey W. Physiological effects of enteral and parenteral feeding on pancreaticobiliary secretion in humans. Am J Physiol Gastrointest Liver Physiol. 2003 Jan;284(1):G27-36. PMID: 12488233.

O'Keefe SJ, Lavender R. The plight of modern Bushmen. Lancet. 1989 Jul 29;2(8657):255-8. PMID: 2569061.

O'Keefe SJ, Abraham R, El-Zayadi A, Marshall W, Davis M, Williams R. Increased plasma tyrosine concentrations in patients with cirrhosis and fulminant hepatic failure associated with increased plasma tyrosine flux and reduced hepatic oxidation capacity. Gastroenterology. 1981 Dec;81(6):1017-24. PMID: 7286580.

O'Keefe SJ, El-Zayadi AR, Carraher TE, Davis M, Williams R. Malnutrition and immuno-incompetence in patients with liver disease. Lancet. 1980 Sep 20;2(8195 pt 1):615-7. PMID: 6107408.

O'Keefe SJ, Sender PM, James WP. "Catabolic" loss of body nitrogen in response to surgery. Lancet. 1974 Nov 2;2(7888):1035-8. PMID: 4138097.

    Honors and Awards
  • South African Society for Parenteral and Enteral Nutrition (Founder and First Chairman) 1985 and 1986-1987, 1985 - 1987
  • Governor’s Award for the Best Scientific Paper, American College of Gastroenterology 2000, 2000
  • VC & Chair, Nutrition & Obesity Section, American Gastroenterology Association, 2003 - 2007
  • NCI-NIH Study Sections (special interest groups and programs), 2003 - Present
  • The Leist Visiting Professorship, Mayo Clinic, Nutrition and the Quality of Life following Small, 2006
  • Associate Editor: Frontiers in Gastroenterology Physiology and Science, 2010 - Present
  • Assistant Editor-in-Chief: World Journal of Gastroenterology, 2011 - Present
  • Editorial Board Gastroenterology Research and Practice, 2013 - Present
  • Panel Member of Biology & Medicine Panel, Hong Kong Research Grants Council 2015-8, 2014-2016
  • External Advisory Committee, Division of Nutritional Sciences, UIUC, 2015-present